PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5226_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 200aa    MW: 22705.2 Da    PI: 5.0458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5226_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1859108355
                                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y GVr ++ +g+++AeIrd + ng   r++lg+f+t+eeAa a+++a+++l+g
  cra_locus_5226_iso_6_len_1065_ver_3  59 YIGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFDTEEEAALAYDQAALSLRG 108
                                          89******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.52458116IPR001471AP2/ERF domain
SMARTSM003801.9E-3458122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3059117IPR001471AP2/ERF domain
PfamPF008473.3E-1359108IPR001471AP2/ERF domain
PRINTSPR003672.1E-95970IPR001471AP2/ERF domain
CDDcd000182.47E-2959117No hitNo description
SuperFamilySSF541711.5E-2259117IPR016177DNA-binding domain
PRINTSPR003672.1E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDFSYIDYNS PSSSTSQDFD HHFYFTYNDD QEIKSKEPEE ELIFTITKSP QEKKKKGSYI  60
GVRKRPWGKY AAEIRDSTRN GMRVWLGTFD TEEEAALAYD QAALSLRGQS ACLNFPAKKV  120
HESLQDIMIC TTEDIGSKSP AAALKEAHKI RSLSKRRSAN KRKPQQLVKG EEEDDVFVFE  180
DLGSDLLDEL LSETESSGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2559118665ATERF1
3gcc_A5e-2559118665ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464424.14e-57PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8LDC87e-47ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A022S0A85e-53A0A022S0A8_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000344898e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165